Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------QREPAKCGSSDAGSVLMPCFAFLEQQS-----------------REPSARCCSAVANSTQKEPPRCLCVFLDQLAR------------AMNRTQPLQLPSLCGDARLTAERCKGLFVANRFA
1W2Q Chain:A ((1-127))
GPMRRERGRQGDSSSCERQVDRVNLKPCEQHIMQRIMGEQEQYDSYDIRSTRSSDQQQRCCDELNE--MENTQGCMCEALQQIMENQCDRLQDRQMVQQFKRELMSLPQQCNFRA--PQRCDLDVSGGRCS
General information:
TITO was launched using:
RESULT:
Template:
1W2Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28751 for 562 contacts (-51.2/contact) +
2D Compatibility (PS) -9299 + (NN) -1438 + (LL) 252
1D Compatibility (HY) -3200 + (ID) 950
Total energy: -43386.0 ( -77.20 by residue)
QMean score : 0.320
(partial model without unconserved sides chains):
PDB file :
Tito_1W2Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1W2Q-query.scw
PDB file :
Tito_Scwrl_1W2Q.pdb
: