Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
----QQLPQGCGPKLG---VLLPCLPFLQGQ------------GSNPTQPCCNGLETVVKLNPACLCALVNS-------QLGNRINITLALSLPSLCNLAGVTIDLCNPTGKFSFKI
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNL---DEKCMCPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLMSQP---CQM--------
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57096 for 514 contacts (-111.1/contact) +
2D Compatibility (PS) -7580 + (NN) 2149 + (LL) 1184
1D Compatibility (HY) -4800 + (ID) 900
Total energy: -67043.0 ( -130.43 by residue)
QMean score : 0.298
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: