Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VTCSP--QELSPCFAAFSSSAPPSSTCCSKLKE-----------QKPCLCGYLKDPNFSQYVNSAKAKKIASTCGVQFPSC
1SIY Chain:A ((1-78))
MTCGQVQGNLAQCIGFLQKGGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR-GINPNNAEALPGKCGVNIP--
General information:
TITO was launched using:
RESULT:
Template:
1SIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7199 for 424 contacts (-17.0/contact) +
2D Compatibility (PS) -6496 + (NN) -946 + (LL) 148
1D Compatibility (HY) -5200 + (ID) 750
Total energy: -20443.0 ( -48.21 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_1SIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SIY-query.scw
PDB file :
Tito_Scwrl_1SIY.pdb
: