Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---------------QGCRGDF-RNLAAQCMPYVQKPGPKTPP-------------------SKGCCNAVRTVDVPCACQHLPPGVGGTVS------------LEKVAFVLRVCGKPLKPGTKCGSYTVPPAV
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDECQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN--------
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -35245 for 597 contacts (-59.0/contact) +
2D Compatibility (PS) -8244 + (NN) -4963 + (LL) 364
1D Compatibility (HY) -3200 + (ID) 800
Total energy: -52088.0 ( -87.25 by residue)
QMean score : 0.277
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: