Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-------DLSCGQVLST---LYPCLGYIRNP------------GASVPAPCCNGIRIVNDEAKNTSDRQSVCRCLKSTIVLPGIN------LDALANLPTNCGVNLPYKITPDIDCNKIPY
1S6D Chain:A ((1-103))
PYGRGRTESGCYQQMEEAEMLNHCGMYLMKNLGERSQVSPRMREEDHKQLCCMQLKNLDEKCM--------CPAIMMMLNEPMWIRMRDQVMSMAHNLPIECNLM-------SQPCQM---
General information:
TITO was launched using:
RESULT:
Template:
1S6D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54837 for 499 contacts (-109.9/contact) +
2D Compatibility (PS) -7238 + (NN) 444 + (LL) 716
1D Compatibility (HY) -3200 + (ID) 700
Total energy: -64815.0 ( -129.89 by residue)
QMean score : 0.347
(partial model without unconserved sides chains):
PDB file :
Tito_1S6D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1S6D-query.scw
PDB file :
Tito_Scwrl_1S6D.pdb
: