Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------------QPVCPLN--RSDLGICVNVLGLISLTT-------------------SNVARCCSILAGLNNTPLVSVCACEAVRLNILNLLG-------ITVNLNLRLNGLLGLCRLPVQPGFNCLL
1PSY Chain:A ((1-125))
AEFMESKGEREGSSSQQCRQEVQRKDLSSCERYLRQSSSRRSTGEEVLRMPGDENQQQESQQLQQCCNQVKQVRDE-----CQCEAIKYIAEDQIQQGQLHGEESERVAQRAGEIVSSCGVRCMRQTRTN-
General information:
TITO was launched using:
RESULT:
Template:
1PSY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -73900 for 621 contacts (-119.0/contact) +
2D Compatibility (PS) -8522 + (NN) -5094 + (LL) 568
1D Compatibility (HY) -800 + (ID) 750
Total energy: -88498.0 ( -142.51 by residue)
QMean score : 0.289
(partial model without unconserved sides chains):
PDB file :
Tito_1PSY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PSY-query.scw
PDB file :
Tito_Scwrl_1PSY.pdb
: