Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSITSEKKKNLINTYAIKEDDTGSSFVQCAILTERISNLTEHFKVHKHDHHSKRGLLILIGRRRKHLNYIKRKFGDEA-YQQLIEKLGIRK
2YKR Chain:O ((1-88))
-SLSTEATAKIVSEFGRDANDTGSTEVQVALLTAQINHLQGHFAEHKKDHHSRRGLLRMVSQRRKLLDYLKRK--DVARYTQLIERLGLRR
General information:
TITO was launched using:
RESULT:
Template:
2YKR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18685 for 617 contacts (-30.3/contact) +
2D Compatibility (PS) -9352 + (NN) -4431 + (LL) 168
1D Compatibility (HY) -7600 + (ID) 2150
Total energy: -42050.0 ( -68.15 by residue)
QMean score : 0.581
(partial model without unconserved sides chains):
PDB file :
Tito_2YKR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2YKR-query.scw
PDB file :
Tito_Scwrl_2YKR.pdb
: