Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQFNISDIIKILPHSYPFLLVDRVIECDPSKSIKAIKNVTFNEPFFIGHFPNHPIMPGVLIVESLAQAS---AICILGKGSKSTMENKVVYLMSIENAKFRKPVTPGDTLILQADFKNARLSVCKFECFAYVGEEKVAEATILAMLQNI
2GLM Chain:A ((23-167))
-QFFIEHILQILPHRYPMLLVDRITELQANQKIVAYKNITFNEDVFNGHFPNKPIFPGVLIVEGMAQSGGFLAFTSLWGFDPEIAKTKIVYFMTIDKVKFRIPVTPGDRLEYHLEVLKHKGMIWQVGGTAQVDGKVVAEAELKAMIAER
General information:
TITO was launched using:
RESULT:
Template:
2GLM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -113758 for 1048 contacts (-108.5/contact) +
2D Compatibility (PS) -15160 + (NN) -2893 + (LL) 208
1D Compatibility (HY) -14800 + (ID) 3300
Total energy: -149703.0 ( -142.85 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_2GLM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GLM-query.scw
PDB file :
Tito_Scwrl_2GLM.pdb
: