Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFKGIITNIGTIINTTIRSNSDQIFHIK---AQNLSSIHEGDSIACSGVCLTVVDIINDIFTVQISQETMKVSNLGAWKVGKKINLEQAMRLSDKIDGHLVHGHVDETAKILTINQNLGSHEIKLSCPQE--LIKFVAKKGSVTLDGVSLTVNSVIGREFTVNIIPYTWQNTTFQYNKVNDYLNLEVDMIARYLDQLIQYKYN
1KZL Chain:A ((1-196))
MFTGLVEAIGVVKD--VQGTIDNGFAMKIEAPQILDDCHTGDSIAVNGTCLTVTDFDRYHFTVGIAPESLRLTNLGQCKAGDPVNLERAVLSSTRMGGHFVQGHVDTVAEIVEKKQDGEAIDFTFR-PRDPFVLKYIVYKGYIALDGTSLTITHVDDSTFSIMMISYTQSKVIMAKKNVGDLVNVEVDQIGKYTEKLVEAHIA
General information:
TITO was launched using:
RESULT:
Template:
1KZL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97371 for 1480 contacts (-65.8/contact) +
2D Compatibility (PS) -20553 + (NN) -1072 + (LL) 160
1D Compatibility (HY) -17200 + (ID) 3550
Total energy: -139586.0 ( -94.31 by residue)
QMean score : 0.352
(partial model without unconserved sides chains):
PDB file :
Tito_1KZL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KZL-query.scw
PDB file :
Tito_Scwrl_1KZL.pdb
: