Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIIIGNASKELGKLIANKLNVQPFSAQVSKFADGAINAEVESNLCSQEVYIIQSISPPVNDHLMELLFIIDAVKRSGTKRITTIIPYYGYSRQDRIIKNNNMQSALNAKLVANLIQTAGASSVAVIDLHSSQIEGFFDVPLTNLSCFEAFADSIH-----IENLAIVAPDVGAIGRARAFAKTLEKKYEIKLSDKIIIIDKYREKAGTSHVMNVIGEATNKNCVIVDDIVDSGGTLCNAALALKNRRARSVISCITHGVLSGNAIEKISSSSLDKLVTTDTIFH--KLEKTDKIEIVSIANILTHFIQGGKDAS
3EFH Chain:A ((4-301))
IKIFSGSSHQDLSQKIADRLGLELGKVVTKKFSNQETCVEIGESVRGEDVYIVQSGCGEINDNLMELLIMINACKIASASRVTAVIPCFPYARQD---KKDKSRAPISAKLVANMLSVAGADHIITMDLHASQIQGFFDIPVDNLYAEPAVLKWIRENISEWRNCTIVSPDAGGAKRVTSIADRLNVDFA--------LIHKERK-------MVLVGDVKDRVAILVDDMADTCGTICHAADKLLSAGATRVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNGE
General information:
TITO was launched using:
RESULT:
Template:
3EFH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -243393 for 2415 contacts (-100.8/contact) +
2D Compatibility (PS) -31643 + (NN) -17931 + (LL) 1616
1D Compatibility (HY) -26000 + (ID) 5150
Total energy: -322501.0 ( -133.54 by residue)
QMean score : 0.590
(partial model without unconserved sides chains):
PDB file :
Tito_3EFH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EFH-query.scw
PDB file :
Tito_Scwrl_3EFH.pdb
: