Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRDEDLELLKFYYEVGIDCTLTEGNEEKKVEKEKNSKAIQSPTIQAEVQKKEQQSMFPSDWIIEARKLASKCNSMDELRSAVKSFEGCEIKKTSTNTVFSDGNQSAKIMLVGEAPGANEDLKGIPFCGASGMLLDKMLSAINLDRTKVYISNTVFWRPPGNRKPTDLELDMCR-PFVEKHIALISPHILILVGGISCYSLLDNTKTISTLRGRFHTYTNQYLSYSITTAVIFHPAYLLRQPAQ-----KRLAWEDLKKIREYLNSTNNCTGV
1UI1 Chain:A ((2-187))
-------------------------------------------------------------------------TLELLQAQAQNCTACRLMEGRTRVVFGEGNPDAKLMIVGEGPGEEEDKTGRPFVGKAGQLLNRILEAAGIPREEVYITNIVKCRPPQNRAPLPDEAKICTDKWLLKQIELIAPQIIVPLGAVAAEFFLGEKVSITKVRGKWYEW------HGIKVFPMFHPAYLLRNPSRAPGSPKHLTWLDIQEVKRALDALP-----
General information:
TITO was launched using:
RESULT:
Template:
1UI1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -127907 for 1480 contacts (-86.4/contact) +
2D Compatibility (PS) -20195 + (NN) -17347 + (LL) 5948
1D Compatibility (HY) -15200 + (ID) 3300
Total energy: -178001.0 ( -120.27 by residue)
QMean score : 0.601
(partial model without unconserved sides chains):
PDB file :
Tito_1UI1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UI1-query.scw
PDB file :
Tito_Scwrl_1UI1.pdb
: