Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELAVGNNAPDFSLPTDSGENLSLSDFFDKKNIVLYFYPKDDTPGCTLEAKGFRDKINDFSSLDTVIIGASRDSIKCHASFKAKYSLPFYLISDENAKMLEKYGVWVEKSMFGKKYMGIERTTFLIDKKDKIVRIWENVKVSGHVNEVLEAVKKI
3GKN Chain:A ((38-158))
--------------------------------LVIYFYPKDSTPGATTEGLDFNALLPEFDKAGAKILGVSRDSVKSHDNFCAKQGFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWRKVKVAGHADAVLAALKAH
General information:
TITO was launched using:
RESULT:
Template:
3GKN.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72790 for 876 contacts (-83.1/contact) +
2D Compatibility (PS) -13117 + (NN) -6473 + (LL) 816
1D Compatibility (HY) -11200 + (ID) 2650
Total energy: -105414.0 ( -120.34 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_3GKN.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GKN-query.scw
PDB file :
Tito_Scwrl_3GKN.pdb
: