Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSISSPRINVMLDSVRSASKQLMRDFNELQISNVKSA--DFINKTYSRSKQTIYNCLHDYKQDYGFIFEDDIDQEAKEKDYTWFIMPIEGRENFSSRMVYFAVSVCLVHKNKVVAAVVNTPALRETFWAEEKKGAFLEDFRSRHIKMRMKSHE-----GSLIDVSGNLLNKLLPGNSNIRSVGSTVLGFTYLAAGRYSGIVYSGVNKYKALLGRLLLQESAGRLTEDNGFIIAGDVKLT
2P3V Chain:A ((3-221))
------RLDFSIKLLRKVGHLLMIHWGRVDNVEKKTGFKDIVTEIDREAQRMIVDEIRKFFPDENIMAEEGIFEKG---DRLWIIDPIDGTINFVHGLPNFSISLAYVENGEVKLGVVHAPALNETLYAEEGSGAFFNGERIR-VSENASLEECVGSTGSYVDFTGKFIERMEKRTRRIRILGSAALNAAYVGAGRVDFFVTWRINPWDIAAGLIIVKEAGGMVTDFSGKEANAFSKNF
General information:
TITO was launched using:
RESULT:
Template:
2P3V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -130138 for 1728 contacts (-75.3/contact) +
2D Compatibility (PS) -22397 + (NN) -4375 + (LL) 464
1D Compatibility (HY) -14000 + (ID) 2900
Total energy: -173346.0 ( -100.32 by residue)
QMean score : 0.381
(partial model without unconserved sides chains):
PDB file :
Tito_2P3V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2P3V-query.scw
PDB file :
Tito_Scwrl_2P3V.pdb
: