Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSLPVVHLLPNNDLAQFNYRHVKIDGILSDIELYVFAGQSGYHALSPMLLTTGRYMLVNKGIVREKEEKKAKIAKVVADGVLYCDSSKSKSWLIKNDIALNTWFTLSTEEISNELGIELEKCILWQKGFSGKLAIQPMKHLEYAITWFALSLIWLIMCIAYYRQNKCHLSS
1N6H Chain:A ((41-98))
--------------AAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1N6H.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10712 for 260 contacts (-41.2/contact) +
2D Compatibility (PS) -6115 + (NN) 149 + (LL) 2884
1D Compatibility (HY) -2400 + (ID) 900
Total energy: -17094.0 ( -65.75 by residue)
QMean score : -0.005
(partial model without unconserved sides chains):
PDB file :
Tito_1N6H.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1N6H-query.scw
PDB file :
Tito_Scwrl_1N6H.pdb
: