Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSPISIKETNADQLPNEKGTRYKENKEYFYTSLKNEAIGVVITGLFITAAVMVPSVVGAVIYGIIAVLVVITTILHAIISTLSSYREMEENKVEHVNSQAIKI
2VN0 Chain:A ((82-119))
-SPISQRITKGLGIISSNGKRWKEIRRFSLTTLRNFGMGKRSIEDRVQEEAHCLVEELRKTKASPCDPTFILGCAPCNVICSVVFQKRFDYKDQNFLTLMKRF
General information:
TITO was launched using:
RESULT:
Template:
2VN0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 9071 for 179 contacts (50.7/contact) +
2D Compatibility (PS) -3879 + (NN) -593 + (LL) 208
1D Compatibility (HY) -2000 + (ID) 650
Total energy: 2157.0 ( 12.05 by residue)
QMean score : 0.305
(partial model without unconserved sides chains):
PDB file :
Tito_2VN0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VN0-query.scw
PDB file :
Tito_Scwrl_2VN0.pdb
: