Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKEAKFIFVTGGVVSSLGKGLVASSVGALLQAHGFKVRIRKLDPYLNIDPGTMSPTQHGEVFVTEDGAETDLDLGHYERFTGIKATKDDNITTGKMYHELLKKERRGDYLGKTVQVIPHVTDLIKSFIFNGTEGLDFVICEIGGTVGDIESQPFLEAIRQISYKLGKQRVILIHLTLVPYLAVAQELKTKPTQHSVRELNFVGLQPDIILCRSEKEISDNQRGKIANLCNVSLSNVISAPDVSHIYELPVLYNQCGLGTQVLEHFHLSKPKPSLVGWNQIVHSMRHPMQEVTVSIVGKYTEFPDTYKSLVEALSHSAISNRIEVKINWVNSRE-----KSGKPINEKFMGDKLKNSHAILVPGGFGDDGIEGKMLAISYARTNNIPFFGICLGMQLAVIEFARNVIKFKDVHSEEFY-TCKHPIIKLAGDKNVDLGGTMRLGAYKCNI-SPNSKMAGAYSDT-IISERHRHRYIINLDYKDDLEKNGLICSGMSEDGTYIEAVELENHPWFIGVQFHPEFQSKPFSPHPLFVSFIKAVVNKVKKTEG |
| 2VKT Chain:A ((296-551)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MKICSIALVGKY-KLRDCYASVFKALEHSALAINHKLNLMYIDSIDLEKITETEDPVKFHEAWQKLCKADGILVPGGFGIRGTLGKLQAISWARTKKIPFLGVCLGMQLAVIEFARNCLNLKDADSTEFRPNAPVPLVIDMPEH------TMRLGIRRTVFKTENSILRKLYGDVPFIEERHRHRFEVNPNLIKQFEQNDLSFVGQDVDGDRMEIIELANHPYFVGVQFHPEFSSRPMKPSPPYLGLLLAATGNL----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2VKT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -158876 for 1997 contacts (-79.6/contact) +
2D Compatibility (PS) -26111 + (NN) -14260 + (LL) 18392
1D Compatibility (HY) -20400 + (ID) 5050
Total energy: -206305.0 ( -103.31 by residue)
QMean score : 0.611
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