Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKILIVNSIYYTEIANLLLEGATDKL----KGSNASYNVIEVPGAFEIPAAILFAVKSKHFNYDGYLALGCVIRGETDHYQYICKGVIKGLNEVVMHNTVPLGMGVITADSKDKALVRADKDKKNIGGRTASAVLHMIDLYNKLR
3NQ4 Chain:A ((13-154))
-ARVAITIARFNQFINDSLLDGAVDALTRIGQVKDDNITVVWVPGAYELPLATEALAKSGK--YDAVVALGTVIRGGTAHFEYVAGGASNGLASVAQDSGVPVAFGVLTTESIEQAIERAGTKAGNKGAEAALTALEMINVLKAI-
General information:
TITO was launched using:
RESULT:
Template:
3NQ4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120950 for 1174 contacts (-103.0/contact) +
2D Compatibility (PS) -15112 + (NN) -9399 + (LL) 360
1D Compatibility (HY) -7200 + (ID) 2450
Total energy: -154751.0 ( -131.82 by residue)
QMean score : 0.474
(partial model without unconserved sides chains):
PDB file :
Tito_3NQ4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NQ4-query.scw
PDB file :
Tito_Scwrl_3NQ4.pdb
: