Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNGTVNKVILVGNLGRNPEIRTMQNGKEMANFSIATSEGWTDKFSGVRSEKTEWHNIVIFSEGLVKVVKDFVRKGSKVYIEGSLKTRKWTDQNGSERYTTEVVLQNFNGTLTLLDSRNNAASSDYKSNEYKQDETGQKDQYENFDSEVKEELIDDEIPF
1QVC Chain:A ((5-121))
-----VNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGK-LAEVASEYLRKGSQVYIEGQLRTRKWTDQSGQDRYTTEVVV-NVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGN------------
General information:
TITO was launched using:
RESULT:
Template:
1QVC.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28591 for 709 contacts (-40.3/contact) +
2D Compatibility (PS) -12743 + (NN) -4730 + (LL) 360
1D Compatibility (HY) -12000 + (ID) 3300
Total energy: -61004.0 ( -86.04 by residue)
QMean score : 0.540
(partial model without unconserved sides chains):
PDB file :
Tito_1QVC.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1QVC-query.scw
PDB file :
Tito_Scwrl_1QVC.pdb
: