Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSNKYYDSNNIFAQILRGELPCKKVYEDEDVLAFYDKYPDAPVHILVVPK---SQYISYDDFIFKASAEEIVGFFKTVREITYKYNLEKTGYRLVTNCGENGEQVVPHFHMHILGGKRLGKHVNL
3O1X Chain:A ((15-121))
-------GDTIFGKIIRKEIPAKIIFEDDQCLAFHDISPQAPTHFLVIPKKHISQISAAED-----ADESLLGHLMIVGKKAAADLGLKKGYRMVVNEGSDGGQSVYHVHLHVLGGRQMNWPPG-
General information:
TITO was launched using:
RESULT:
Template:
3O1X.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -61790 for 725 contacts (-85.2/contact) +
2D Compatibility (PS) -11546 + (NN) -8943 + (LL) 776
1D Compatibility (HY) -6000 + (ID) 2150
Total energy: -89653.0 ( -123.66 by residue)
QMean score : 0.520
(partial model without unconserved sides chains):
PDB file :
Tito_3O1X.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3O1X-query.scw
PDB file :
Tito_Scwrl_3O1X.pdb
: