Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDGACSGNPGTGGWAAIILFQDYRKDVYGREENTTSNKMELTAVINGLKALKFSCNINLYTDSLYVKSGITEWVSKWKVNGWKTSSKRSVKNIELWKELDNIASQHKINWKWVKAHNGDKHNEEANNLARKAIIDA
1RBS Chain:A ((10-144))
-DGSCLGNPGPGGYGAILRYRGREKTFSAGYTRTTNNRMELMAAIVALEALKEACEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALGQHQIKWEWVKGHAGHPENERCDELARAAAMNP
General information:
TITO was launched using:
RESULT:
Template:
1RBS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24880 for 1002 contacts (-24.8/contact) +
2D Compatibility (PS) -14665 + (NN) -6441 + (LL) 208
1D Compatibility (HY) -8800 + (ID) 3200
Total energy: -57778.0 ( -57.66 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_1RBS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RBS-query.scw
PDB file :
Tito_Scwrl_1RBS.pdb
: