Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGIKFLNPVTPSSRGTVLVSKIGLSRGKPEKSLAFGKKSSGGRNNNGRITIRHKGGGHKKKYRIIDFKRNRND-QGVVEKIEYDPNRSGFLALVSYKCDDTKSYILAPQGIKPGDIVMSGSGIDILPGNCLPLKGIPIGSFVHGVELKPGSGAVIARAAGCYAQVVGRDGNYVLLRLRSGQVRLVLSSCKATIGVVSNPDRKNRKLGKAGRSRWLGVRPTVRGVAMNPVDHPHGGGEGKTSGGRHPVTPWGVATKGKKTRKKNKFSDKYIKQLKG |
4CSU Chain:C ((7-266)) | -------PTSPGRRHVVKVVNPELHKGKPFAPLLEKNSKSGGRNNNGRITTRHIGGGHKQAYRIVDFKRNKDGIPAVVERLEYDPNRSANIALVLYK-DGERRYILAPKGLKAGDQIQSGVDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGEVGNAEHMLRVLGKAGAARWRGVRPTVRGTAMNPVDHPHGGGEGRNF-GKHPVTPWGVQTKGKKTR-SNKRTDKFIVRRRS |
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General information:
TITO was launched using:
| RESULT:
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Template: 4CSU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 71093 for 1818 contacts (39.1/contact) +
2D Compatibility (PS) -26428 + (NN) -520 + (LL) 480
1D Compatibility (HY) 16800 + (ID) 650
Total energy: 60775.0 ( 33.43 by residue)
QMean score : 0.163
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