Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MVRRITLNSNFMFGASDIKSLPNESAPEIAFAGRSNVGKSSLINLLINSKKAARVSSKPGCTRQINFYSMYNDKFRLVDLPGYGCSHASKDETIQYLGLVEYYLIHRRNLRRVFVLIDSKVRLKEIDKDFIYWLTYNNINFDVVLTKIDKVDRENLDAIIESTRKWINNESVSIRQISVRVKYEMTKVRDEFFKFTR
1SVI Chain:A ((6-164))
--------SEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINR-------------QTLNFY-IINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI
General information:
TITO was launched using:
RESULT:
Template:
1SVI.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99468 for 1045 contacts (-95.2/contact) +
2D Compatibility (PS) -15437 + (NN) -3455 + (LL) 1436
1D Compatibility (HY) -11200 + (ID) 2700
Total energy: -130824.0 ( -125.19 by residue)
QMean score : 0.550
(partial model without unconserved sides chains):
PDB file :
Tito_1SVI.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SVI-query.scw
PDB file :
Tito_Scwrl_1SVI.pdb
: