Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSEKIELIFEKLKQSNPIPKIELSYTNHFTLLVAIVLSARTTDVSVNKITKELFSIANTPEKMLNLGQSELKKHISSIGLYNSKAKNIIELSRILVERHTSKVPTNFDDLVSLPGVGRKSANVFLNSGLGIPTLAVDTHVFRVSNKIGLVKEKDVFKTEKSLL----NVVPKKYLLYAHHWLVLHGRYVCKAQKPSCKTCIIHDLCEFECKRYKV
1KEA Chain:A ((36-215))
-----------------------------YVILITEILLRRTTAGHVKKIYDKFFVKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRYFGGSYENLNYNHKALWELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYYEKC---
General information:
TITO was launched using:
RESULT:
Template:
1KEA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -87425 for 1259 contacts (-69.4/contact) +
2D Compatibility (PS) -18134 + (NN) -8426 + (LL) 2288
1D Compatibility (HY) -12800 + (ID) 2450
Total energy: -126947.0 ( -100.83 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_1KEA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KEA-query.scw
PDB file :
Tito_Scwrl_1KEA.pdb
: