Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGYVINIQAIKKQIELSPQSCGVYQMIGDKDKVLYVGKAKNLKSRLSNYLRYENLSERTKFMLSQVIKVEVLVTENEIDALLLEARLIKSLKPPYNIIFKDGRSYPYIVISKHNYPRIAQYRGKFKKGEFHYYGPFISVAAVKQTMLSLQKTFLLRVCSDQYFASTKRPCIEYQIKRCSAPCVGKITKDDYCQSVKQTRDTLLGRNEKVKKQLSSTMEKCSKEENYELAAIYRDRLKFLEQIQMQSMDFSFEKDADFFGIARKEDLACIGVLSFRNKDNYGSTPYFVENCSDHPDDEILSTFLIKLYNSANIPPAQIYVSDFVTGKEIIEQALHNVTHKPIKALHAKSKKEHNLLKFVYDNSQRSLEQKLTDYKNNLEKFEELSKIFLLPNIPKRVEVYDNSHTSGNQQVGVMVVAGKEGFLK-SEYRKFTIKGEILGDDYEMMREVLTRRFSNNTKDVVPDFLLIDGGPGHISVVQNVLNTLNINVPFACMAKGSYRNAGNERFYMPNREDFTLKNDSKVMLYLQSLRNEAHRFAITSHRKKRDKQFFVSPLSKITSIGDKRKNALMSHFGSVENISKASLAEIQNVARISKELAEVILKHVDNKE |
2NRZ Chain:A ((7-216)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EALEELMKLLNMKDFPYRIEGIDISHLQGKYTVASLVVF-EDGFPKKGDYRRYKIEQD-HPDDYESIRTVVKRRYS---KHPLPNLLFVDGGIGQVNAAIEALKEIGKDCPVVGLAKKE------ETVVFENRE-IHLPHDHPVLRLLVQIRDETHRFAVSYHRKRREKESLRSVLDNVPGIGPIRKKKLIEHFGSLENIRSASLEEIARVIG-STEIARRVLDIL---- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2NRZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -110400 for 1570 contacts (-70.3/contact) +
2D Compatibility (PS) -22941 + (NN) -10503 + (LL) 27376
1D Compatibility (HY) -17200 + (ID) 4200
Total energy: -137868.0 ( -87.81 by residue)
QMean score : 0.625
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