Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLSPCPRAKVCFSPGEDCAVLIISEIDQSKESVLVQEYTFTLETIARALINAKERSVDVEVILDKSQLHSKYSVINKLFSNGIPVWIDDKPKIAHNKVIIVDNQKVITGSFNLTKTAKKGNAENLLIIKNYPELVQQYVKNWEIRKSQSYKYAS
4GGK Chain:A ((67-171))
-------------------------------------FAFSSPQLGRAVQLLHQRGVRVRVITDCDYM---GSQIGLLRKAGIQVRHDQDLGYMHHKFAIVDKKVLITGSLNWTTQAIQNNRENVLIMEDT-EYVRLFLEEFERIWEEFDPT--
General information:
TITO was launched using:
RESULT:
Template:
4GGK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44649 for 666 contacts (-67.0/contact) +
2D Compatibility (PS) -11420 + (NN) -5183 + (LL) 2948
1D Compatibility (HY) -8000 + (ID) 1800
Total energy: -68104.0 ( -102.26 by residue)
QMean score : 0.532
(partial model without unconserved sides chains):
PDB file :
Tito_4GGK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4GGK-query.scw
PDB file :
Tito_Scwrl_4GGK.pdb
: