Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDHSTSYGLITNIRPSPSWLSKLSFWRKKTLLISQFRTSVALYVNENNHILNAIKGSSLSKILDRVNIRDKDGLSALHLTVKGGNVNIVKLLLDGGAEPNIRSWMNLTTPLHNAVLNNRVYIVKLLFDSHANSNILSRSDISPLYFAVVNN
2QYJ Chain:A ((40-121))
------------------------------------------------------------------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDK-DGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREG
General information:
TITO was launched using:
RESULT:
Template:
2QYJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -37249 for 658 contacts (-56.6/contact) +
2D Compatibility (PS) -8846 + (NN) -5875 + (LL) 4588
1D Compatibility (HY) -3200 + (ID) 1500
Total energy: -52082.0 ( -79.15 by residue)
QMean score : 0.502
(partial model without unconserved sides chains):
PDB file :
Tito_2QYJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2QYJ-query.scw
PDB file :
Tito_Scwrl_2QYJ.pdb
: