Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLSGINNFMNEVLFFKIFYVPFIILLVAFGYIFLTLRFKFLNIRMFKHAFTILCGKYDTDHHDGHITHFQAFVIALSSTVGLGTVAGVAIAVSMGGPGAIPWMMITGFFGMSAKFAEVTLAFRHRTEGQEQLFSGPFQYIRNGLEEFGFKKLGIILAAVYAVFFVLSGLGGSVAFQTNQMVSILSGYSNWVDSH---PWFLSSIISALLALVIIGGIRRIARVSSALVPVMSLIYIFSCI-TIITFNIHNFSNVFKILFSNMIDFNAVGGGVVGAFVAGIQRAIFASEAGVGSASITHAVAKDEEPVRTGLVAMIEPCFDTMLICCLTGIT-IVITGAYQTGIGEGILVTQKAFETVSS-WFPIFLIIAAPLFAFSSVISFVYCCEMGWLYLFGAK----------SIVIYRIAVVVVAFFSG--LSKDIMAIANIGGTLFSCLALINMTALILFSSQINDEVQCYSKRLRNNKIN |
| 3GIA Chain:A ((3-368)) | ------------------------------------------------------------LKNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVS------NAGPIAFIHKAIGDNI---ITGALSILLWMSYV-----ISIALFAKGFAGYFLPLIN-APINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAP--------S-AVSGM----IFASAIFFLSY---MGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLPIDELIKASENALA-VAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAKDGELPEFFERKVWFKSTEGLYITSALGVLFALLFNMEGVASITSAVFMVIYLFVILSHYILIDEVGGRKEIVIFSFIVVLGV |
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General information:
TITO was launched using:
| RESULT:
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Template: 3GIA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -359714 for 3140 contacts (-114.6/contact) +
2D Compatibility (PS) -35449 + (NN) -1214 + (LL) 7864
1D Compatibility (HY) -17200 + (ID) 2350
Total energy: -408063.0 ( -129.96 by residue)
QMean score : 0.352
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