Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRSFFVFLIFFSVSALASVSDVQLKEKYRDWLVYTALEDGEKVCYIVSYPKKKSEHYTTNRKPYVMVSYVDK--KADEVSVTSGFQYDKEPIVLNIDKKIK-YALYI-IQGDLAWTEHTKTDRDLILKMKQGLSMVVSGRIK--ATT--IDDTYSLLGFQKAYQKMHDLCYVK
3DTD Chain:A ((24-168))
----------------------SLTETYGLWSINCGIQ---KVCFMHRQEVNDQN---R-VVVAMSVVLNADGVVSGNLTVPFGILVSKP-VRLQVDEGKAVIETGIRTCVPAGCIVPIVFDKNYVAALRAGKHLKLAMTIAAPGEPPLNDLFVQLNGFSNALNRLIALQKE-
General information:
TITO was launched using:
RESULT:
Template:
3DTD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -46490 for 915 contacts (-50.8/contact) +
2D Compatibility (PS) -14600 + (NN) -1207 + (LL) 2252
1D Compatibility (HY) -5200 + (ID) 1150
Total energy: -66395.0 ( -72.56 by residue)
QMean score : 0.378
(partial model without unconserved sides chains):
PDB file :
Tito_3DTD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DTD-query.scw
PDB file :
Tito_Scwrl_3DTD.pdb
: