Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARNNPNIKLLYIRDLFAKECKEIEEYCILGKKQHIQISPEEGKLLSLFIKIHKVRSIVEIGTLYGYSSICMAKALPEYGHIYTIENNPKHFKIAKKNFNAFNMSNKITLIVGNALEKLAELSAKAP---YDMIFIDADKAGYPKYLDWAESYIKQDGLIVADNTLLLNTVFLKSPPKEVLEKSWRAMREFNYRLSDEKKYCSILIPTDEGMTIALKLT
3CBG Chain:A ((54-231))
-----------------------------------MQISPEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADKRNYPRYYEIGLNLLRRGGLMVIDNVLWHGKVTEVDPQ----EAQTQVLQQFNRDLAQDERVRISVIPLGDGMTLALKK-
General information:
TITO was launched using:
RESULT:
Template:
3CBG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -107203 for 1451 contacts (-73.9/contact) +
2D Compatibility (PS) -18947 + (NN) -6249 + (LL) 3628
1D Compatibility (HY) -16000 + (ID) 3250
Total energy: -148021.0 ( -102.01 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_3CBG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CBG-query.scw
PDB file :
Tito_Scwrl_3CBG.pdb
: