Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMIFRLLFLLVFISVNSYAVIKQDLSNNHYIQKINEITSKELLLPLPDDKLLGDSKAPILMIEYASLTCYHCSLFHREVFPEIKKKYIDTGKMLYIFRHFPLDYRGLKAAMLSYCYEKQED---YFNFNKAVF----NSIDSWNYSN-LSDLTVLQKVAALSNLKQDTFNRCINDKEVMDKIINDKSLAINKLGIMATPIFFIKLNNDRSHTEPNKIRHEGYKAQEYFTNVIDRLYEKAIVK
3EU4 Chain:A ((9-169))
---------------------------------NDAVSGQPSIKGQP---VLGKDDAPVTVVEFGDYKCPSCKVFNSDIFPKIQKDFIDKGDVKFSFVNVMFHGKGSRLAALASEEVWKEDPDSFWDFHEKLFEKQPDTEQEWVTPGLLGDL-----AKSTTKIKPETLKENL-DKETFASQVEKDSDLNQKMNIQATPTIYVNDKVIKNFADYDEIKETIEKELKG---------------
General information:
TITO was launched using:
RESULT:
Template:
3EU4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106588 for 1164 contacts (-91.6/contact) +
2D Compatibility (PS) -15632 + (NN) -2274 + (LL) 4384
1D Compatibility (HY) -6800 + (ID) 1950
Total energy: -128860.0 ( -110.70 by residue)
QMean score : 0.528
(partial model without unconserved sides chains):
PDB file :
Tito_3EU4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EU4-query.scw
PDB file :
Tito_Scwrl_3EU4.pdb
: