Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLEKIQSDVEDIWKNRSKLSNRSVKRAARVIIKKVIKLLDSGKIRVAERLSDGKWIVHTWIKQAISLYFLTEESKMIDHT-GWWFDKVNNKFDGWNEEEFHQSKIRAVPGCFVRQSAYVGTNVVLMPSFINVGAYISSGTMIDTWSTIGSCAQIGKNCHVSGGVGIGGVLEPIQASPVIIEDNCFIGARSEVAEGVIIREGSVLGMGVFIGASTKIIDRETNKVFYGEVPPYSVVVPGSTLSAN-NISIYCAIIVKKVDEKTRQKTSINEILRD
3TDT Chain:A ((1-271))
--MQQLQNVIESAFERRADITPANVDTVTREAVNQVIGLLDSGALRVAEKI-DGQWVTHQWLKKAVLLSFRINDNKVMDGAETRYYDKVPMKFADYDEARFQKEGFRVVPPATVRQGAFIARNTVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHLSGGVGIGGVLEPLQANPTIIEDNCFIGARSEVVEGVIVEEGSVISMGVYLGQSTRIYDRETGEIHYGRVPAGSVVVSGNLPSKDGSYSLYCAVIVKKVDAKTRGKVGINELLRT
General information:
TITO was launched using:
RESULT:
Template:
3TDT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -226717 for 2147 contacts (-105.6/contact) +
2D Compatibility (PS) -29619 + (NN) -13156 + (LL) 300
1D Compatibility (HY) -30000 + (ID) 7250
Total energy: -306442.0 ( -142.73 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_3TDT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3TDT-query.scw
PDB file :
Tito_Scwrl_3TDT.pdb
: