Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNRSTDTKRKEMIELKGPEICTDRSRENLIVCLHGRGSSGNNFVHLAKVMSKSLPNSCFVAPNA---PSKREIGNGYQ-WFSLEDRSEEVL-----YNGVKNAASIVNHFIDTKLKEFSLKDTQLSLVGFSQGAMLAIHTALTRPQCCASVVAYSGKFLSPSRVAPKIKSRPN---VCVIHGDADNVVPFSF-FDLTVKALKENGVNVEGYPIRTLGHLINKEGIKLGVEFIKKNFKK
4F21 Chain:A ((40-245))
------------------------------VIWLH--GADGHDFVDIVNYFDVSLDEIRFIFPHADIIPVTINMGMQMRAWYDIKSL---SLNRVVDVE-INSSIAKVNKLIDSQVNQ--IASENIILAGFSQGGIIATYTAITSQRKLGGIMALSTYLPAWDNFKGKITSINKGLPILVCHGTDDQVLPEVLGHDLSDK-LKVSGFANEYKHYVGMQHSVCMEEIKDISNFIAKTFKI
General information:
TITO was launched using:
RESULT:
Template:
4F21.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -115054 for 1449 contacts (-79.4/contact) +
2D Compatibility (PS) -19974 + (NN) -10213 + (LL) 2076
1D Compatibility (HY) -16000 + (ID) 2800
Total energy: -161965.0 ( -111.78 by residue)
QMean score : 0.383
(partial model without unconserved sides chains):
PDB file :
Tito_4F21.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4F21-query.scw
PDB file :
Tito_Scwrl_4F21.pdb
: