Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKDLILLGIASVIGA---LTGLWLSFTALSHLI--IGGVIAAIPVMLLSAYYICDSIRKGKFSKKDLFESYLCMLHKCHDWSWSCCNRNCFFPGAMIGIGYATLAGGAIAPIIAIFPMYSIIVPIAEKVNEYIIFPIIEYFSLKGKEHEQV
4HYT Chain:A ((292-351))
-----IITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSPHDKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQE
General information:
TITO was launched using:
RESULT:
Template:
4HYT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21765 for 242 contacts (-89.9/contact) +
2D Compatibility (PS) -5522 + (NN) -1858 + (LL) 296
1D Compatibility (HY) -8000 + (ID) 800
Total energy: -37649.0 ( -155.57 by residue)
QMean score : -0.076
(partial model without unconserved sides chains):
PDB file :
Tito_4HYT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4HYT-query.scw
PDB file :
Tito_Scwrl_4HYT.pdb
: