Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MMKITISKVLPDFETLVVGLFEDGELVSNGKVLQ--DKQIINSIKKFSHFNGGFGE---FFSVTLSDGKNVIIVGLGKRDEWNENKELSVGGKI------------YCELGRLKIK------QATVSIEGSAENIAYGAFLRSFKFDKYKTKKDEEITEVEEIMV-LAKDEQLNDAEKSFEHLRQEGEGIFLARTFITEPPNVL---YPESYADCIKSELTKFGLEIEVLDKKQMEKKKMGALLGVAQGSSKEPKLVVIRWNG-ASKEQKPIAFVGKGITFDTGGVSLKPSRGMESMKYDMAGSAAVVGVMRTLAGRKARINAVGVVALAENAIDGNAQRPSDVVTSMSGQTIEVLNTDAEGRLVLADALWYTQDRFAPEFMIDLATLTGAIVVALGNNEYAGLFSNNDELANRLVEAGNEANEKLWRFPMNETYDKIIDSPIADVQNIAPTGSGGDSIMAAQFLQRFVNDTCWAHLDIAGTAWHEKGTDISPKGAVGFGVRLLNKLVEKYYETSD |
| 1GYT Chain:A ((17-493)) | --------------CIVVGVFEPRRLSPIAEQLDKISDGYISALLRRGELEGKPGQTLLLHHVPNVLSERILLIGCGKERELDERQYKQVIQKTINTLNDTGSMEAVCFLTELHVKGRNNYWKVRQAVETAKETL--------YSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIKAAKDLGNMPPNICNAAYLASQARQLADSYSK-NVITRVIGEQQMKELGMHSYLAVGQGSQNESLMSVIEYKGNASEDARPIVLVGKGLTFDSGGISIKPSEGMDEMKYDMCGAAAVYGVMRMVAELQLPINVIGVLAGCENMPGGRAYRPGDVLTTMSGQTVEVLNTDAEGRLVLCDVLTYV-ERFEPEAVIDVATLTGACVIALGHH-ITGLMANHNPLAHELIAASEQSGDRAWRLPLGDEYQEQLESNFADMANIG--GRPGGAITAGCFLSRFTRKYNWAHLDIAGTAWRSG----KAKGATGRPVALLAQFLLNRAGFNG |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GYT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -228881 for 3979 contacts (-57.5/contact) +
2D Compatibility (PS) -48066 + (NN) -18249 + (LL) 2228
1D Compatibility (HY) -37600 + (ID) 9100
Total energy: -339668.0 ( -85.37 by residue)
QMean score : 0.493
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