Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFVNGGQLKKINQKWLIIGTGLLLFMMMLPSIILLAKMTIGLVMVLVVAIAIKIASKTISNVLEDKQADPNQLTSQTTQSRIINLAVGLVSIFTGGLSLLIIAKTGIAVICAAVVTLAIYEYAKDYK-YAEDKEIGKSINDKLDEIAKNTTNFIVSGIEKLVSPQEQQV
4R9V Chain:A ((246-318))
--------------------------------------------------------------------DKEQLQQQYSQSPLPNFIFTGTTTWAGGETKEYYAQQQVNVINNAINETSPYYLGKDYDLFFKGHPAGGVINDIILGSFPDMINIPAKISFEVLMMTDMLP
General information:
TITO was launched using:
RESULT:
Template:
4R9V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -14557 for 385 contacts (-37.8/contact) +
2D Compatibility (PS) -7253 + (NN) 2325 + (LL) 7184
1D Compatibility (HY) -1600 + (ID) 1050
Total energy: -14951.0 ( -38.83 by residue)
QMean score : 0.021
(partial model without unconserved sides chains):
PDB file :
Tito_4R9V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4R9V-query.scw
PDB file :
Tito_Scwrl_4R9V.pdb
: