Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGSPEFAINALNSLLKSKNEVVAVYTKAPKPSGRGQKLTKSPVHIIAEESGIEVCTPTSLKPLVEQEKFKKFKPDVAVVAAYGLILPKEILNILKYSCINIHPSLLPRWRGAAPIQHTILAGDRKTGISIMQLDGGLDSGPILKQKKFLVEKNDNYKTLHDKLSKLGSNLLMEVIDEIEKHPPLE--QSDDGACYADKIE------DYKIYASDICEVAYRKVKAF--YPKAFVKIEHKRVRILDADFEVDASLTSGQGKIINDNMH---ISLKSGTLIPKIVQMEGRNSCNIKDFVRGLKFSMVKKFIE |
| 3R8X Chain:A ((14-304)) | -GTPDFAARHLGALLSSQHKIVGVFTQPDRP------LTPSPVKILAEHHGIPVFQPKSLRPEENQHLVADLNADIMVVVAYGLILPAAVLAMPRLGCINVHGSLLPRWRGAAPIQRSVWAGDEKTGITIMQMDIGLDTGAMLHKIECAIQPEDTSATLYDKLAQLGPQGLLITLQQLAAGTALAEVQNETQATYAEKLSKEEAKLDWTLSATQL----ERCIRAFNPWPVSYFIVDEQPIKVWQAQV-LPAGEDAEPGTIIHADKHGIQVATADGVLNITQLQPAGKKAMSAADLLNSRREWFIPGSQL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3R8X.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -120190 for 2090 contacts (-57.5/contact) +
2D Compatibility (PS) -29762 + (NN) -11928 + (LL) 720
1D Compatibility (HY) -24400 + (ID) 5200
Total energy: -190760.0 ( -91.27 by residue)
QMean score : 0.481
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