Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKWLDIENIAEALEEKFPGEDIVNIRFTKLKEKVLNLEG-FSDDEKRCNEKILEAIQAAWIEERS
2KPM Chain:A ((38-78))
-GWANLGNFGNYLNKLQPDFDSRLYGYKKLSDLVKARTDLFVTEERQVPGSTQKALYLRAKLEHH
General information:
TITO was launched using:
RESULT:
Template:
2KPM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -7640 for 201 contacts (-38.0/contact) +
2D Compatibility (PS) -4352 + (NN) -2746 + (LL) 208
1D Compatibility (HY) -1200 + (ID) 450
Total energy: -16180.0 ( -80.50 by residue)
QMean score : 0.747
(partial model without unconserved sides chains):
PDB file :
Tito_2KPM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KPM-query.scw
PDB file :
Tito_Scwrl_2KPM.pdb
: