Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRTFQPKNLIRKRRHGFRSRMATRAGRKILNRRRSLGCKKLCA
2EQQ Chain:A ((12-18))
---------------------MRTPDGRCKPTFYQLIT------
General information:
TITO was launched using:
RESULT:
Template:
2EQQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 250 for 17 contacts (14.7/contact) +
2D Compatibility (PS) -661 + (NN) 460 + (LL) 2004
1D Compatibility (HY) -400 + (ID) 200
Total energy: 1453.0 ( 85.47 by residue)
QMean score : -0.005
(partial model without unconserved sides chains):
PDB file :
Tito_2EQQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2EQQ-query.scw
PDB file :
Tito_Scwrl_2EQQ.pdb
: