Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MATHLSFRQGVQECIPTLLGYAGVGISFGIVASSQNFSILEIILLCLVIYAGAAQFIMCALFIAGTPISAIVLTVFIVNSRMFLLSMSLAPNFKTYGFWNRVGLGSLVTDETFGVAITPYLKGEAINDRWMHGLNITAYLFW.....AISCVAGALFGEYISNPQTLGLDFAITAMFIFLAIAQFESITKSRLRIYIVLIIAVIVMMLSLSMFMPSYLAILIAATISAALGVMMER |
1RPB Chain:A ((8-21)) | --------------------------------------------------------------------------------------------------------------------------------NDFAGCGYAVVCFW---------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RPB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -3910 for 51 contacts (-76.7/contact) +
2D Compatibility (PS) -1263 + (NN) 1445 + (LL) 22596
1D Compatibility (HY) -2400 + (ID) 150
Total energy: 16318.0 ( 319.96 by residue)
QMean score : -0.386
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