Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFKEERTMTNYTVDTLNLGKFITESGEVIDNLRLRYEHVGYHGQPLVVVCHALTG----NHLTYGTDD-YPGWWREIIDGGYIPIHD-YQFLTFDVIGSPFGSSSPLN-DPH--------FPKKLTLRDIVRANERGIQALGYDKINILIGGSLGGMQAMELLYNQQFEVDKAIILAATSRTSSYSRAFNEIARQAIHL-------------GGKEGLSIARQLGFLTYRSSKSYD-----------ERFTPD-EVVAYQQHQGNKFKEHFDLNCYLTLLDVLDSHNIDRGRTDVTHIFKNLE----TKVLTMGFIDDLLYPDDQVRALGERFKYHRH--FFVPDN--VGHDGFLLNFSTWAPNLYHFLNLKHFKRK |
| 3VVL Chain:A ((38-392)) | --------------------FAMRRGGALYGARIAYETFGSLNAARDNAVLVLTGLSPDAHAASRPDDPTPGWWEAMVGPGKPVDTDLWHVICVNSLGSCKGSTGPASTDPRTGEPYRLSFPE-LSIEDIADAAAHTVRALGISRLACVVGASMGGMSALALLARHPELARTHISLSGAVHALPFSIAVRSLQREAIRSDPGWLQGHYDEGEGPRRGMLTARKLGMMTYRSAQEWDCRFGRTRIGER-RFGPEFEVESYLDFHAQRFADRFDPNSYLYLSHAMDQFDLGDGGGGGGGAPGALSRMRVERALVMGARTDILFPLSQQQEIADGLSAGGADVSFLPVDTPAGHDAFLVDIERFGPPVAKFLAI------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VVL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -168399 for 2603 contacts (-64.7/contact) +
2D Compatibility (PS) -32492 + (NN) -12660 + (LL) 2056
1D Compatibility (HY) -13200 + (ID) 4650
Total energy: -229345.0 ( -88.11 by residue)
QMean score : 0.343
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