Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKQVIGYLRQSTMKQQSLAAQKQAIEAIAEKHHIQHINFYSDKQSGRKDNRSGYRQMTQLIQQGQCDILCCYRLNRLHRNLKNALKLIKLCQTYHVHILSVHDGYFDMDQAFDRFKLNIFISLAELESDNIGEQVRNGLQEKAKQGRLITTHAPFGYEYHNGAFIINQNESPTVKAVFNYYIKGHGYKKIAQLLEEDNTYINRQPYQVRNIIINPNYCGRVNNQYGQFDNMFPSIVSTSIYEQAQRLRSQKQIKQTSSDNQLKQKIKCPCCNTTLTNMTVRKKNHTLRYYVCPKNMNASRFVCDFKGINAQTLEDKVLEVCKDFYQNQRIYTKIKGAIDKRIKRQRNIEKHHTLTQEQLIEKLAQGIIDAETFREQTQSLRQQPQRTTSINGHQIQHTIQNIIQKRFTLNILYPYIETIHITKDKNLIGIYFKNEPLNIVNQTMQSSIA |
2GM4 Chain:A ((3-168)) | ---LFGYARVST-SQQSLDIQVRALKDAGVKAN----RIFTDKAS----DRKGLDLLRMKVKEG--DVILVKKLDRLGRDTADMIQLIKEFDAQGVSIRFIDD-SIDTSSAMGRMVVTILSAVAQAERQRILQRTNEGRQEAMAKG------VVFGRKRK-----IDRD------AVLNMWQQGLGASHISKTM--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GM4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -71049 for 1006 contacts (-70.6/contact) +
2D Compatibility (PS) -17090 + (NN) -3691 + (LL) 20688
1D Compatibility (HY) -8000 + (ID) 2450
Total energy: -81592.0 ( -81.11 by residue)
QMean score : 0.281
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