Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTQGWWFPVMASAFLIFTIVIMFIAGTGQYGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNKGMISDTILHFSSSIVQHMSGPLFIIVLLFIFFCLGFIVPSSSGLA-------VLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMATLQMLNVRYSHWLRFVWPVVAFVLIFGGGLLITQVLIYS
1JB0 Chain:B ((387-463))
-------------------------------------VGAFAHGA---------IFLVRDYDPAQNKGNVLDRVLQHKEAIISHLS----WVSLFLGFHTLGLYVHNDVVVAFGTPEKQILIEPVFA--------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1JB0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -20217 for 283 contacts (-71.4/contact) +
2D Compatibility (PS) -6663 + (NN) 3827 + (LL) 10660
1D Compatibility (HY) -6000 + (ID) 1300
Total energy: -19693.0 ( -69.59 by residue)
QMean score : -0.019
(partial model without unconserved sides chains):
PDB file :
Tito_1JB0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JB0-query.scw
PDB file :
Tito_Scwrl_1JB0.pdb
: