Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSVLKWVSSYNNERDAWFVLYPPSKASSCFTLIVDVALFSE
3VMA Chain:A ((667-681))
----------NNNVDTWFAGIDGST----------------
General information:
TITO was launched using:
RESULT:
Template:
3VMA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 288 for 32 contacts (9.0/contact) +
2D Compatibility (PS) -1707 + (NN) -1762 + (LL) 2540
1D Compatibility (HY) -400 + (ID) 300
Total energy: -1341.0 ( -41.91 by residue)
QMean score : 0.202
(partial model without unconserved sides chains):
PDB file :
Tito_3VMA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3VMA-query.scw
PDB file :
Tito_Scwrl_3VMA.pdb
: