Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFFKQFYDNHLSQASYLVG--CQRTGEAIIIDPV-RDLSKYIEVADSEGLTITQATETHIHADFASGIRDVAKRLNANIYVSGEGEDALGYKNMPSKTQ------FVKHGDIIQVGNVKLEVLHTPGHTPESISFLLTDLGGGSSVPMGLFSGDFIFVGDIGRPDLLEKSVQIKGSTEISAKQMYESVQN-IKNLPDYVQIWPGHGAGSPCGKALGAIPISTIGYEKINNWAFNEIDETKFIESLTSNQPAPPHHFAQMKQVNQFGMNLYQSYDVYPSLDNKRVAFDLRSKEAFHGGHTKGTINIPYNKNFINQIGWYLDFEKDIDLIGDKSTVEKAKHTLQLIGFDKVAGYRLPKSGISTQSVHSADMTGKEEHVLDVRNDEEWNNGHLDQAVNIPHGKLLNENIPFNKEDKIYVHCQSGVRSSIAVGILESKGFENVVNIREGYQDFPESLK |
| 2GCU Chain:A ((3-207)) | LLFRQLFENESSTFTYLLADVSHPDKPALLIDPVDKTVDRDLKLIDELGLKLIYAMNTHVHADHVTGTGLLKTKLP-------------GVKSVISKASGSKADLFLEPGDKVSIGDIYLEVRATPGHTAGCVTY-VTGEGADQPQPRMAFTGDAVLIRGCGRTDFQEG----------SSDQLYESVHSQIFTLPKDTLIYPAHD--------YKGFEVSTVGEEMQHNPRLTKDKET----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GCU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -75283 for 1664 contacts (-45.2/contact) +
2D Compatibility (PS) -21164 + (NN) -4487 + (LL) 12672
1D Compatibility (HY) -12400 + (ID) 3250
Total energy: -103912.0 ( -62.45 by residue)
QMean score : 0.452
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