Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEKFNNWILNAISGSQTDKNETTEELKGAKFIILYAYSMLVLLALVISNIFI--HILEPKLSITTQIIIVLILIEALIGLRFLKAYDVKRGKD---KENKKNSKDFVKLKSILVAILFTSLALTAGTVADIYGFTDLGNTRSDLIVWSIGGIIFGLVCYTMEDKK
3L1L Chain:A ((116-241))
------------------------------FPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWF-RGETYMA-----------AIQSTLNVTLWSFIGVESASVAA----GVVKNPKRNVPIATIGGVLIAAVCYVL----
General information:
TITO was launched using:
RESULT:
Template:
3L1L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45914 for 526 contacts (-87.3/contact) +
2D Compatibility (PS) -11199 + (NN) -1818 + (LL) 2592
1D Compatibility (HY) -11200 + (ID) 1300
Total energy: -68839.0 ( -130.87 by residue)
QMean score : -0.000
(partial model without unconserved sides chains):
PDB file :
Tito_3L1L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3L1L-query.scw
PDB file :
Tito_Scwrl_3L1L.pdb
: