Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKLQLKKWKCRENDIEAVHNNKGYAYQRKLDALEEVRKGYYPIKRAIDLVLSIVLLFLTFPIMFIFAIAIVIDSPGNPIYSQVRVGKMGKLIKIYKLRSMCKNAEKNGAQWADKDDDRITNVGKFIRKTRIDELPQLINVVKGEMSFIGPRPERPEFVELFSSEVIGFEQRCLVTPGLTGLAQIQGGYDLTPQQKLKYDMKYIHKGSLMMELYISIRTLMVVITGEGSR |
4Q4J Chain:A ((160-195)) | ----------------------------------------------SINVKLSSVLIFLIPPIVLLF---VWLTKKGNPLFRKIQ------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4Q4J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -14651 for 136 contacts (-107.7/contact) +
2D Compatibility (PS) -3255 + (NN) 3673 + (LL) 13884
1D Compatibility (HY) -6400 + (ID) 650
Total energy: -7399.0 ( -54.40 by residue)
QMean score : -0.094
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