Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAFKLPNLPYAYDALEPYIDQRTMEFHHDKHHNTYVTKLNATVEGTELEHQSLADMIANLDKVPEAMRMSVRNNGGGHFNHSLFWEILSPNSEEKGG------VIDDIKAQWGTLDEFKNEFANKATTLFGSGWTWLVVNDGKLEIVTTPNQDNPLTE------GKTPILLFDVWEHAYYLKYQNKRPDYMTAFWNIVNWKKVDELYQAAK
2CDY Chain:A ((21-231))
LAYTLPQLPYAYDALEPHIDARTMEIHHTKHHQTYVDNANKALEGTEFADLPVEQLIQQLDRVPADKKGALRNNAGGHANHSMFWQIMGQGQ----ANQPSGELLDAINSAFGSFDAFKQKFEDAAKTRFGSGWAWLVVKDGKLDVVSTANQDNPLMGEAIAGVSGTPILGVDVWEHAYYLNYQNRRPDYLAAFWNVVNWDEVSKRYAAAK
General information:
TITO was launched using:
RESULT:
Template:
2CDY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -89287 for 1573 contacts (-56.8/contact) +
2D Compatibility (PS) -20133 + (NN) -4421 + (LL) 100
1D Compatibility (HY) -20800 + (ID) 5550
Total energy: -140091.0 ( -89.06 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_2CDY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2CDY-query.scw
PDB file :
Tito_Scwrl_2CDY.pdb
: