Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLNTEDTDEVKILTIWESEDSFNNWLNSDVFKEAHKNVRLKSDDDGQQSPILSNKVFKYDIGYHYQK
1SQE Chain:A ((17-124))
MFMAENRLQLQKGSAEETIERFYNRQGIETIEGFQQMFVTKTLNTEDTDEVKILTIWESEDSFNNWLNSDVFKEAH--------DDGQQSPILSNKVFKYDIGYHYQK
General information:
TITO was launched using:
RESULT:
Template:
1SQE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18073 for 619 contacts (-29.2/contact) +
2D Compatibility (PS) -10619 + (NN) -2023 + (LL) 412
1D Compatibility (HY) -13200 + (ID) 5000
Total energy: -48503.0 ( -78.36 by residue)
QMean score : 0.471
(partial model without unconserved sides chains):
PDB file :
Tito_1SQE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SQE-query.scw
PDB file :
Tito_Scwrl_1SQE.pdb
: