Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFIVIKIGGSTLS--DMHPSIINNIKHLRSNNIYPIIVHGGGPFINEALSNQQIEPHFVNGLRVTDKATMTITKHTLIADVNTALVAQFNQHQCSAIGLCGLDAQLFEITSF--DQQYGYVGVPTALNKDALQYLCT-KFVPIINSIGFNNHDGEFYNINADTL-AYFIASSLKAPIYVLSNIAGVLIN----DVVIPQLPLVDIHQYIEHGDIYGGMIPKVLDAKNAIENGCPKVIIASGNKP-NIIESIYNNDFVGTTILNS
2RD5 Chain:A ((37-296))
-KTIVVKYGGAAMTSPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLNIPAEFRDGLRVTDATTMEIVSMVLVGKVNKNLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIASVAADDS-GQAYNINADTVAGELAAALGAEKLILLTDVAGILENKEDPSSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMI---
General information:
TITO was launched using:
RESULT:
Template:
2RD5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -216603 for 2116 contacts (-102.4/contact) +
2D Compatibility (PS) -27027 + (NN) -8793 + (LL) 200
1D Compatibility (HY) -20400 + (ID) 4150
Total energy: -276773.0 ( -130.80 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_2RD5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RD5-query.scw
PDB file :
Tito_Scwrl_2RD5.pdb
: