Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MRKVLNIFTIAFKSILK-NKGRNIFTMIGIIIGISSVITIMSLGNGFKKTAADQFSDAGAGKQEALISFTFKVDEKIKKYPFNQRDIELVNQVDGVLDAKLKENKEEGIEATITNVQKKSDIFIIKKQNLHSFKVGRGFDKEDN--ELRKKIVVINDQVAKTV--FNNNAIGK-------------SLYIEGQ---GFEVIGITDKLYSDSSTVIMP----ENTFNYYMGHLHQGLPTLQIIIEDGYNKKTVVKKVESLLNKKGSGSVLGEYTYTDTEEIIKSIDKIFDSITYFVAAVAGISLFIAGIGVMNVMYISVAERTEEIAIRRAFGAKSRDIELQFLIESILICVTSGFIGLILGVVFATIIDVLTPDYIKSVVSLSSVIIAVSVSILIGLLFGWIPARAASKKELIDIIK |
| 3LW2 Chain:A ((20-210)) | -----------FQQVVQASKDRNV---VFSPYGVSSVLAML------------QMTTAGKTRRQIQDAMGFKVNEKGTAHALRQLSKELMG----------PWNKNEISTADAIFVQR--DLELVQGFMPHFFKLFQTMVKQVDFSEVERARFIINDWVERHTKGMINDLLAKGAVDELTRLVLVNALYFSGQWKTPFLEASTHQRL------VSVPMMAQSNKFNY---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LW2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 18104 for 865 contacts (20.9/contact) +
2D Compatibility (PS) -16247 + (NN) 2520 + (LL) 19272
1D Compatibility (HY) -9600 + (ID) 2450
Total energy: 11599.0 ( 13.41 by residue)
QMean score : 0.128
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